Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGNGVQPLDPVAIQIGSISVKWYGVIIASAVVIALLLALSEANKRKMDKEIIVDLLIWAIPISIISARIYYVIFEWDFYKNNLGEIVKIWHGGIAIYGALIGAVLTAIIFSRIKKISFWQLADVVAPSLIIAQAIGRWGNFMNQEAHGAETTRSFLESLHLPDFIINQMYIDGAYYQPTFLYESLWNVLGFVILLIIRRTKIRRGELFLGYVIWYSFGRFFIEGMRTDSLMWGDFRVSQALSLLLIVLSIGIIIYRRLKMNPPYYMEDKFGKVVKKK |
1PGE Chain:A ((274-337)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFLQLKF------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1PGE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -33229 for 326 contacts (-101.9/contact) +
2D Compatibility (PS) -6545 + (NN) -2149 + (LL) 19004
1D Compatibility (HY) -4800 + (ID) 850
Total energy: -28569.0 ( -87.63 by residue)
QMean score : 0.014
|
|
|