Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKLVLMGLPGAGKGTQAEQIVEKYNIPHISTGDMFRAAMKNNTELGRKAKSFMDNGDLVPDEVTNGIVRERLSEDDAKDGFLLDGFPRTVEQAQELENILSDLGTELDAVINIDVEKDVLMKRLTGRWICRTCGKTYHEIYNPPKVPGKCDLDGGELYQRDDDKKETVEKRLNVNMKQTKPLLDFYSEKGKLHNINGEQEIKDVFVDVEKILASF
4MKF Chain:A ((1-215))
MNLVLMGLPGAGKGTQGEKIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVRKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQMQPLLDFYSEKGYLANVNGEQDIEDVYADVKDLLGGL
General information:
TITO was launched using:
RESULT:
Template:
4MKF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60790 for 1692 contacts (-35.9/contact) +
2D Compatibility (PS) -23799 + (NN) -17219 + (LL) 0
1D Compatibility (HY) -25200 + (ID) 7450
Total energy: -134458.0 ( -79.47 by residue)
QMean score : 0.564
(partial model without unconserved sides chains):
PDB file :
Tito_4MKF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MKF-query.scw
PDB file :
Tito_Scwrl_4MKF.pdb
: