Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNRLKDQYLKEIVPALMSKFNYDSVMEVPKIDKIVINTGVGDATANAKVLDSAVEELALITGQKPVITKAKNSIAGFRLREGMPIGAKVTLRGERMYDFLDKLVTVSLPRVRDFRGVSKKAFDGRGNYTLGVREQLIFPEIDYDQVSKVRGMDVVIVTTAKSDEESHELLTQLGMPFQK
3IYY Chain:F ((1-178))
-AKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTAKSDEEGRALLAAFDFPFRK
General information:
TITO was launched using:
RESULT:
Template:
3IYY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1381731 for 13530 contacts (102.1/contact) +
2D Compatibility (PS) -16745 + (NN) -1125 + (LL) 208
1D Compatibility (HY) 2000 + (ID) 1200
Total energy: 1364869.0 ( 100.88 by residue)
QMean score : ?
(partial model without unconserved sides chains):
PDB file :
Tito_3IYY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IYY-query.scw
PDB file :
Tito_Scwrl_3IYY.pdb
: