Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LASTIYDIAKHAGVSKSTVSRVLNNQANISEESRKKVLAAIDQLNYQPSKLARALTSSGFDAIMVISNRSTTTTTGNPFFSEIIQSISTQAELENFDLILQTAKNSEDELKKCLSKIQEKMIKGIIMLSSPADEDFFHQLDPY-NIPIVVTGKVEGHYKNIYSVDTDNFGDSYALTKHLIKQGHQKIACIHAPLDYHVSIDRLAGFRSCLFDHQLDLRNDWIIDSGYSIEDSYKAALRLMEGPDKPTAVFATDDLKVLSIYKMAADKNLQIPTDFSVIGYNDKVASSFLSPPLTSIDIPINKLGKKATNLLFRLIHQDKNVPKTTIIQTEMIERESIQKINA |
| 1PNR Chain:A ((2-330)) | ---TIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLA-----TSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSV----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PNR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -201314 for 2780 contacts (-72.4/contact) +
2D Compatibility (PS) -36163 + (NN) -22112 + (LL) 840
1D Compatibility (HY) -24000 + (ID) 5150
Total energy: -287899.0 ( -103.56 by residue)
QMean score : 0.538
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