Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLENDIKKVLYSEEDIILKTKELGAKLTADYAGKNPLLVGVLKGSVPFMAELLKHIDTHVEIDFMVVSSYHGGTTSSGEVKILKDVDTNIEGRDVIFIEDIIDTGRTLKYLRDMFKYRQANSVKVATLFDKPEGRLVDIDADYVCYDIPNEFIVGFGLDYAENYRNLPYVGVLKEEIYSK
1YFZ Chain:A ((30-204))
---EDIEEILITEEQLKAKVKELGEMITRDYEGKDLVLIGVLKGAIMFMSGLSRAIDLPLSIDFLAVSSYGSSTKSSGIVKIIKDHDIDIEGKDVLIVEDIIDSGLTLAYLRETLLGRKPRSLKICTILDKPERREADVKVDYCGFKIPDKFVVGYGLDYAEKYRNLPFIGVLKPELY--
General information:
TITO was launched using:
RESULT:
Template:
1YFZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121143 for 1357 contacts (-89.3/contact) +
2D Compatibility (PS) -19564 + (NN) -9280 + (LL) 524
1D Compatibility (HY) -20400 + (ID) 4650
Total energy: -174513.0 ( -128.60 by residue)
QMean score : 0.604
(partial model without unconserved sides chains):
PDB file :
Tito_1YFZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YFZ-query.scw
PDB file :
Tito_Scwrl_1YFZ.pdb
: