Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MELIFRIFEMKKTLYITNKLFFANWFVPVIGAVLIQVIGIIVSRRLVVKLLPDDYKFNLYIALLLFVPILASIL-----LFLIYFQKRDFTSLGFTKDNNVLTTISGFITGSLLMFFIYICHWLSGFVEISSSNSFSFGPFFFLFLAYFIQSLTEE----ILFRGYVMTTVTKFKGSFAGVLCNSMLFSFIHFRNYGITAIALFNLFLLGIIFSILFNMTKNILFVTGVHTTWNFTMGCVLGNKVSGGYSPVSLFRITENSSFALWNGGDFGFEGGVLCSLILVGCLAYFSLESVRVSVRY |
4Q2E Chain:A ((29-290)) | ------ITASVVAPFVVLCFVSYESLIGLVSAILILAGYELIT----LEMKERDARFFYVILLALYPVLYGLVFEEPTQPLSILFITGVVFSLITDKDPSQVFKTVAAFSIALIYVTFFLSFFLPIYRDFGAANALLVLTSTWVFDSFAYFTGLKFGRTRISPRYSPRKSLEGVIGGFLGVVIYTFLYRLVVNDLLSVNVIC----------FRTFLPFAATVAIMDTFGDIFECALKRHYGVKDSGKTLP--------------GHGG----MLDRIDGLLFVAPVSYIVFKILEGVVR- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4Q2E.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -284809 for 2050 contacts (-138.9/contact) +
2D Compatibility (PS) -24547 + (NN) 4574 + (LL) 3972
1D Compatibility (HY) -19200 + (ID) 2000
Total energy: -322010.0 ( -157.08 by residue)
QMean score : 0.164
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