Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVCFVCLGNICRSPMAEFVMANLDKEDSLS----VESRATSTWEHGNPIHRGTQAILQRYQIPYINDKGSQPISKDDLAYFDYIIGMDEQNVKDLKALSQ------------GTYDDKISLFCDGGVPDPWYT--GDFEETYRLVNDGCKQWLTLINNSRD
3N8I Chain:A ((6-153))
-KSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRGQSCMKRHGIPM--SHVARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSYDPQKQLI----IEDPYYGNDSDFETVYQQCVRCCRAFLEKAH----
General information:
TITO was launched using:
RESULT:
Template:
3N8I.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59332 for 1046 contacts (-56.7/contact) +
2D Compatibility (PS) -14054 + (NN) -3638 + (LL) 320
1D Compatibility (HY) -13200 + (ID) 2950
Total energy: -92854.0 ( -88.77 by residue)
QMean score : 0.464
(partial model without unconserved sides chains):
PDB file :
Tito_3N8I.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N8I-query.scw
PDB file :
Tito_Scwrl_3N8I.pdb
: