Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVPKRVKHRREFRGKMRGEAKGGKEVSFGEYGLQATTSHWITNRQIEAARIAMTRYMKRGGKVWIKIFPHKSYTAKAIGVRMGSGKGAPEGWVAPVKRGKVMFEIAGVSEEVAREALRLASHKLPVKCKFVKREAE
1Y69 Chain:K ((6-136))
----KRTKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFRRGGKIYIRIFPDKPVTKKPAETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAFRLAGHKLPIQTKMVKREVY
General information:
TITO was launched using:
RESULT:
Template:
1Y69.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25191 for 827 contacts (-30.5/contact) +
2D Compatibility (PS) -13885 + (NN) -2417 + (LL) 436
1D Compatibility (HY) -10800 + (ID) 3900
Total energy: -55757.0 ( -67.42 by residue)
QMean score : 0.359
(partial model without unconserved sides chains):
PDB file :
Tito_1Y69.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y69-query.scw
PDB file :
Tito_Scwrl_1Y69.pdb
: