Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIYHMILCNSDIMKILAIIKSLPLNDCWLCAGTLRNFIWNKLSGINETL-TSDIDVVFFDKNISYEETVVLEQQLKDNYPQYDWELKNEFYMNTHSP-NTPKYTSSKDAISKFPEKCTAVGARLDDRNQLELYLPYGEEEILNFIVSPTPYFEEDLLRYNVYLKRVDKKKWNNIWPRLTIIKK
2LA3 Chain:A ((9-190))
-QEILEAFRESPDMMAILTIIRDLGLKDSWLAAGSVRNFIWNLLSDKSPFDHETDIDVIFFDPDFSYEETLLLEKKLREDFPQYQWELKNQVYMHQHSPHT-ASYTSSRDAMSKYPERCTAVGLRLNEELDFELYVPYGLEDILNFQVRPTPHFLENEDRMELYQTRLSKKNWQEKWKNLIFKNT
General information:
TITO was launched using:
RESULT:
Template:
2LA3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84561 for 1308 contacts (-64.6/contact) +
2D Compatibility (PS) -19011 + (NN) -7148 + (LL) 260
1D Compatibility (HY) -18400 + (ID) 4600
Total energy: -133460.0 ( -102.03 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_2LA3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LA3-query.scw
PDB file :
Tito_Scwrl_2LA3.pdb
: