Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKEKTSQLVQLAIVTAISIVLGMFISIPTP-TGFLTLLDAGIFFAAFYFGKKEGAVVGALAGFLIDLLKGYPNWMFFSLLIHGAQGYLAGLPGRRRLLGLISATLVMVLGYAIASGLMYGWGAVLPDIPGNIMQNMVGMVVGFALNKSLERVKK
2KSF Chain:A ((398-463))
----QIQGSVVAAALSAVITLIAMQWLMAFDAANLVMLYLLGVVVVALFYGRWPSVVATVINVVSFDLFF-------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2KSF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43478 for 378 contacts (-115.0/contact) +
2D Compatibility (PS) -6904 + (NN) -6379 + (LL) 6188
1D Compatibility (HY) -6800 + (ID) 550
Total energy: -57923.0 ( -153.24 by residue)
QMean score : 0.076
(partial model without unconserved sides chains):
PDB file :
Tito_2KSF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KSF-query.scw
PDB file :
Tito_Scwrl_2KSF.pdb
: