Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MITLEKFIDHLNVEEVLFTFFTKLISILLLIIAFVIVRQVINYLFEKTVNRSLAFSRQKVARQKTLAKLSHNVLNYTLYFFLFYWILSILGVPISSLLAGAGIAGVAIGLGAQGFLSDVVNGFFILLENQFDVGDIINVGTVSGTVTNVGIRTTQIHDFDGTLHFIPNRNITI--VSNKSRSNMRA-QIDIPLFVHTNLDQISDIVTKI--NEEYVSKHPAIVGEPTVFGPTTNANGQFVYRINIFTQNGAQFDIYAEFYKLYQKAILEEGIDLPTYNFSNNHSR |
| 4AGF Chain:A ((25-279)) | -----------------LSYAVNIVAALAIIIVGLIIARMIS----NAVNR-LMISRKIDA---TVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLALQGSLSNLAAGVLCVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQILTNIIQSEDRILKDREMTVRLNELGASSI---NFVVR--VWSNSGDLQNVYWDVLERIKREFDAAGISFPYPQMDVNFKR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4AGF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -130376 for 1594 contacts (-81.8/contact) +
2D Compatibility (PS) -26549 + (NN) -8910 + (LL) 2752
1D Compatibility (HY) -22800 + (ID) 3550
Total energy: -189433.0 ( -118.84 by residue)
QMean score : 0.300
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