Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKILVVEDNIVQQKIITTKLTQEGYQFITASNGQEALNCLDTEEVQLIITDIMMPMMDGYQLIQELRSAAYNVPIIVMTAKSQMEDMTKGFGLGADDYMVKPVQLQELALRIKALLRRANIVAQHQLIIGNTCLNEDELSLKYFEQEIVFPQKEFRVLFHLLSYPNRIFTRLELLDSIWGMDTDLDERVVDACINKIRRKVEHLPDFKIETVRGVGYRAKND
1NXO Chain:A ((2-119))
-KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLM---IDGLEVAKTIRKTS-SVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQ------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1NXO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93019 for 908 contacts (-102.4/contact) +
2D Compatibility (PS) -12824 + (NN) -8258 + (LL) 8772
1D Compatibility (HY) -9600 + (ID) 2500
Total energy: -117429.0 ( -129.33 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_1NXO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NXO-query.scw
PDB file :
Tito_Scwrl_1NXO.pdb
: