Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTETLLSIKDLSITFTQYGRFLKPFQSTPIQALNLEIKKGELLAIIGASGSGKSLLAHAIMDILPKNASVTGDMIYRGQSLNSKR--IKQLRGKDITLIPQSVNYLDPSMKVKHQVRLGISE----NSKATQE---GLFQQFGLKESDGDLYPFQLSGGMLRRVLFTTCISDKVSLIIADEPTPGLHPDALQMVLDQLRSFADKGISVIFITHDIVAASQIADRITIFKEGKAIETA-PASFFSGNGEQLQTEFARSLLRSLPQQEFLKGVTHDLRG
4YMV Chain:J ((17-240))
-----------------------------LKGVTLKVNKGEVVVIIGPSGSGKSTLLRCI-NLLEE--PTKGEVFIDGVKINNGKVNINKVRQK-VGMVFQHFN-LFPHLTAIENITLAPVKVKKMNKKEAEELAVDLLAKVGLLDKK-DQYPIKLSGGQKQRLAIARALAMQPEVMLFDEPTSALDPEMVKEVLNVMKQLANEGMTMVVVTHEMGFAREVGDRVIFMDDGVIVEEGTPEEIFYRAKNERTREFLSKIL------------------
General information:
TITO was launched using:
RESULT:
Template:
4YMV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144278 for 1679 contacts (-85.9/contact) +
2D Compatibility (PS) -23485 + (NN) -16421 + (LL) 3112
1D Compatibility (HY) -19200 + (ID) 3150
Total energy: -203422.0 ( -121.16 by residue)
QMean score : 0.478
(partial model without unconserved sides chains):
PDB file :
Tito_4YMV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YMV-query.scw
PDB file :
Tito_Scwrl_4YMV.pdb
: