Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKESFKLIATAAAGLEAIVGREI----RNLGIDCQVEN------GRVRFHGD---------------IKTIIETNLWLRAADRIKIIVGEFPARTFEELFQGVYGL-DWENYLPLGAKFPIAKAKCVKSKLHNEPSVQAISKKAVAKKL-QKVFHRPE--GVPL---QENGAEFKIEVSILKDKATVMIDTTG-SSLFKRGYRAEKGGAPIKENMAAAIIQLSNWFPDKPLIDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEAWPWVDQSQVQKVRDEAESKANYDIDLDISGFDLDGRMVEIARKNAEEAGLGDVIKLKQMRLQDLK--TDKINGVIISNPPYGERLLDDKAVDILY----NEMGQTFAPLKTWSKFILTSDEGFEK---KYGSQADKKRKLYNGTLKVDLYQYYGERVRRQVK |
| 3TM5 Chain:A ((1-362)) | ----MKFLLTTAQGIEDIAKREVSLLLKKLGISFQIEEKPLGIEGRLLLEAEKAYYVDEKGRKRELSISTYLNENSRLLHRVIIEIASEKFNGIEKDESEEALKRIKDFVSSLPVEQFVKVSETFAVRSFRKGDHNITSID---IARTVGEAIFERLSRFGTPLVNLDHPAVIFRAE--LIKDVFFLGIDTTGDSSLHKRPWRVYDHPAHLKASIANAMIELAE-LDGGSVLDPMCGSGTILIELAL----------RRYSGEIIG------IEKYRKH-----------------LIG-----AEMNALAAGVLDKIKFIQGDATQLSQYVDSVD-FAISNLPYGLKIG-KSMIPDLYMKFFNELAKV---LEKRGVFITTEKKAIEEAIAENGFEIIHHRVIGHGGLMVHLYVVKLEHH----- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3TM5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -96786 for 2588 contacts (-37.4/contact) +
2D Compatibility (PS) -34366 + (NN) -11817 + (LL) 3256
1D Compatibility (HY) -21600 + (ID) 5250
Total energy: -166563.0 ( -64.36 by residue)
QMean score : 0.400
|
|
|