Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKEVVVESFELDHTIVKAPYVRLISEEVGPVGDIITNFDIRLIQPNENAIDTAGLHTIEHLLAKLIRQRING----LIDCSPFGCRTGFHMIMWGKQDATEIAKVIKSSLEAIAGGVTWEDVPGTTIESCGNYKDHSLHSAQEWAKLILSQGISDNAFERHIV
1J6W Chain:A ((3-157))
-----LLDSFKVDHTKMNAPAVRIAKTMLTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNGDSIEIIDISPMGCRTGFYMSLIGTPNEQKVSEAWLASMQDVLGVQDQASIPELNIYQCGSYTEHSLEDAHEIAKNVIARGIGVNKNEDLSL
General information:
TITO was launched using:
RESULT:
Template:
1J6W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80081 for 1115 contacts (-71.8/contact) +
2D Compatibility (PS) -15679 + (NN) -3100 + (LL) 620
1D Compatibility (HY) -12800 + (ID) 2950
Total energy: -113990.0 ( -102.23 by residue)
QMean score : 0.562
(partial model without unconserved sides chains):
PDB file :
Tito_1J6W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J6W-query.scw
PDB file :
Tito_Scwrl_1J6W.pdb
: