Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKYSIRGENIEVTEAIREYVETKLSKVEKYFNEAQELDTRVNLKVYREKTAKV-EVTILIDSITLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKYREKIPASQVFTTEFEAEPDEEAVSQRIVRTKNVNLKPMDVEEALLQMELLGHDFFIYTDAEDNTTNVLYKREDGELGLIEAKGN
1L4S Chain:A ((3-86))
----NITSKQMEITPAIRQHVADRLAKLEKW----QTHLINPHIILSKEPQGFVADATINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE-------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1L4S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27125 for 527 contacts (-51.5/contact) +
2D Compatibility (PS) -9031 + (NN) -1044 + (LL) 6604
1D Compatibility (HY) -4000 + (ID) 1350
Total energy: -35946.0 ( -68.21 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_1L4S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L4S-query.scw
PDB file :
Tito_Scwrl_1L4S.pdb
: