Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKDLTKIDRDLEEAKKKVADLENEKRQAEENLQKQIGKLYVQIQLKKDKSQSYETILDDLKTELELIKQEEKARREEAKNRQLTSSDEH
4TKO Chain:B ((162-219))
--EKSIQEINTEIKRAKKGIENARNEFKTIEE-LKKELSSLEEEIKSLKERIKTAEQKIKDTVLIAPFDGVVAKRFISRGDVVRAGQPAFA
General information:
TITO was launched using:
RESULT:
Template:
4TKO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 10366 for 226 contacts (45.9/contact) +
2D Compatibility (PS) -6601 + (NN) -4453 + (LL) 272
1D Compatibility (HY) -1200 + (ID) 800
Total energy: -2416.0 ( -10.69 by residue)
QMean score : 0.519
(partial model without unconserved sides chains):
PDB file :
Tito_4TKO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TKO-query.scw
PDB file :
Tito_Scwrl_4TKO.pdb
: