Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALAKIVYASMTGNTEEIADIVADKLRDLGLDVEVEECTMVDAAD-FEDADIAIVATYTYGDG--DLPDEIVDFYEDLAEVDLSGKVYGVVGSGDTFYDYFCKSVDEFEAQFALTGAQKGADCVKVDLAAEDEDIENLEAFAEEIASKLN
1FX1 Chain:A ((2-127))
-PKALIVYGSTTGNTEYTAETIARQLANAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSYEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVRGAI--
General information:
TITO was launched using:
RESULT:
Template:
1FX1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73856 for 981 contacts (-75.3/contact) +
2D Compatibility (PS) -13243 + (NN) -3037 + (LL) 528
1D Compatibility (HY) -6400 + (ID) 2100
Total energy: -98108.0 ( -100.01 by residue)
QMean score : 0.601
(partial model without unconserved sides chains):
PDB file :
Tito_1FX1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FX1-query.scw
PDB file :
Tito_Scwrl_1FX1.pdb
: