Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIAIPAFALSVLSGQFIGQKLADSLVYQASRTVRADFMKGFGNMQLGSDSDTDMFMQTKCTSEA
2UZZ Chain:A ((339-359))
---------GFKFASVLGEIAADFAQDKKSDFDLTPFRLSRFQ---------------------
General information:
TITO was launched using:
RESULT:
Template:
2UZZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2120 for 79 contacts (26.8/contact) +
2D Compatibility (PS) -2081 + (NN) 1723 + (LL) 1964
1D Compatibility (HY) 800 + (ID) 200
Total energy: 4326.0 ( 54.76 by residue)
QMean score : -0.245
(partial model without unconserved sides chains):
PDB file :
Tito_2UZZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2UZZ-query.scw
PDB file :
Tito_Scwrl_2UZZ.pdb
: