Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSSFYKQRKGKLVCGVVAGLADKYNWDLALSRVLIALILYFTKFGLLLYILLAVFLPYKEDIIETRRQGPRRRKDAEPVDDDGWFW
4UMP Chain:A ((216-232))
---------------------------------------------GILLYVLMCGFLPFDDD-------------------------
General information:
TITO was launched using:
RESULT:
Template:
4UMP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8891 for 61 contacts (-145.8/contact) +
2D Compatibility (PS) -1882 + (NN) -1581 + (LL) 5204
1D Compatibility (HY) -3600 + (ID) 450
Total energy: -11200.0 ( -183.61 by residue)
QMean score : 0.943
(partial model without unconserved sides chains):
PDB file :
Tito_4UMP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4UMP-query.scw
PDB file :
Tito_Scwrl_4UMP.pdb
: