Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIEIAVLIIAIAFVVLVLGILFVLKKVSETIEETKQTIKVLTSDVNVTLYQTNEILAKANVLVDD-VNGKVSTIDPLFVAIADLSESVSDLNLQARHIGQKASSATSSVTKAGSALAIGKAASKIFRKKGDKK
4UDU Chain:C ((111-161))
----------------------------------------------VTLHDNNRLTEEKKVPINLWIDGKQTTVPIDKVKTSKKEVTVQELDLQARHYLHGKFGLYNSDSFGGKVQRGLIVFHSSEGSTVSYD
General information:
TITO was launched using:
RESULT:
Template:
4UDU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4873 for 234 contacts (-20.8/contact) +
2D Compatibility (PS) -5002 + (NN) 1781 + (LL) 5744
1D Compatibility (HY) -1200 + (ID) 800
Total energy: -4350.0 ( -18.59 by residue)
QMean score : 0.101
(partial model without unconserved sides chains):
PDB file :
Tito_4UDU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4UDU-query.scw
PDB file :
Tito_Scwrl_4UDU.pdb
: