Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKKPIIIGVTGGSGGGKTSVSRAILS--NFPDQKITMIEHDSYYKDQSHLTFEERVKT-----NYDHPLAFDTNLMIEQLNELIEGRPVDIPVYDYTKHTRSDRTIRQDPQDVIIVEGILVLEDQRLRDLMDIKLFVDTDDDIRIIRRIKRDMEERDRSLDSIIEQYTEVVKPMYHQFIEPTKRYADIVIPEGVSNIVAIDLINTKVASILNEAK
1UEI Chain:A ((21-232))
---EPFLIGVSGGTASGKSSVCAKIVQLL---QKQVVILSQDSFYR---VLTSEQKAKALKGQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDILN---
General information:
TITO was launched using:
RESULT:
Template:
1UEI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85912 for 1534 contacts (-56.0/contact) +
2D Compatibility (PS) -21442 + (NN) -7104 + (LL) 612
1D Compatibility (HY) -22000 + (ID) 4600
Total energy: -140446.0 ( -91.56 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_1UEI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UEI-query.scw
PDB file :
Tito_Scwrl_1UEI.pdb
: