Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDTLKLYFVCGTVDCSRKNILTVVEEALQAGITLFQFREKGFTALQGKEKIAMAKQLQILCKQYQVPFIIDDDIDLVELIDADGLHIGQNDLPVDEARRRLPDKIIGLSVSTMAEYQKSQLSVVDYIGIGPFNPTQSKADAKPAVGNRTTKAVREINQDIPIVAIGGITSDFVHDIIESGADGIAVISAISKANHIVDATRQLRYEVEKALVNRQKRSDVIK
1G4E Chain:A ((22-235))
MKELLSVYFIMGS-NNTKADPVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAACREAGVPFIVNDDVELALNLKADGIHIGQ--ANAKEVRAAIGDMILGVAAHTMSEVKQAEEDGADYVGLGPIYPT-----TRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMISAISQAEDPESAARKFREEIQTYKTGR--------
General information:
TITO was launched using:
RESULT:
Template:
1G4E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -162828 for 1788 contacts (-91.1/contact) +
2D Compatibility (PS) -23535 + (NN) -15714 + (LL) 900
1D Compatibility (HY) -10400 + (ID) 4300
Total energy: -215877.0 ( -120.74 by residue)
QMean score : 0.655
(partial model without unconserved sides chains):
PDB file :
Tito_1G4E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G4E-query.scw
PDB file :
Tito_Scwrl_1G4E.pdb
: