Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVETPLETIYTATMATVDYMNDMNRGKTAYVIGEEGLKKAIADAGYVEDTKNPAYVVVGLDWNVTYDKLATATLAIQNGALFIGTNPDLNIPTERGLLPGAGSLNALLEAATRIKPVFIGKPNAIIMNKALEILNIPRNQAVMVGDNYLTDIMAGINNDIDTLLVTTGFTTVEEVPDLPIQPSYVLASLDEWTFNEG
4IG4 Chain:A ((16-266))
--YNGYLIDLDGTMYRGTERIDAASGFIKELNRLHIPYLFVTNNSTRTPEQVADKLVSLDIPATPEQIFTSSMATANYVYDLDQSAMIYFIGEEGLYKALKEKGFSFADENADVVIVGLDREVTYEKLAVACLAVRNGAKLISTNGDLALPTERGFMPGNGAFTALISHSTQVKATFVGKPEPIIMEQALKVLGTNKNETIMVGDNYDTDILAGIRAGLDTLLVHTGVTTVEKLKEYKQQPTYSMKSLDDWKFL--
General information:
TITO was launched using:
RESULT:
Template:
4IG4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -160138 for 2145 contacts (-74.7/contact) +
2D Compatibility (PS) -27971 + (NN) -12889 + (LL) 376
1D Compatibility (HY) -27600 + (ID) 6350
Total energy: -234572.0 ( -109.36 by residue)
QMean score : 0.654
(partial model without unconserved sides chains):
PDB file :
Tito_4IG4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IG4-query.scw
PDB file :
Tito_Scwrl_4IG4.pdb
: