Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQSNHRYHGPLIEFEIEYSYIKIFPWIGLFISCIGLYASNFGDPLGFIKFIFSVCIFVNLVSIIISLFLKKYLIF
2LOT Chain:A ((34-56))
-----------------------------------------------IYMLVFLLGTTGNGLVLWTVFRKKGHHHH
General information:
TITO was launched using:
RESULT:
Template:
2LOT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11266 for 88 contacts (-128.0/contact) +
2D Compatibility (PS) -2023 + (NN) 3001 + (LL) 2712
1D Compatibility (HY) -800 + (ID) 100
Total energy: -8476.0 ( -96.32 by residue)
QMean score : -0.245
(partial model without unconserved sides chains):
PDB file :
Tito_2LOT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LOT-query.scw
PDB file :
Tito_Scwrl_2LOT.pdb
: