Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKKDKKIEIQISDAQVTVNGTKVDGYQLVIGKKIVGQIAELDSKFAVIKGEQVSGFYKNLDQAMGNIIEEYNLNR
1T8V Chain:A ((59-110))
----DVVFELGVDFAYSLADGTELTGTWTMEGNKLVGKFKRVDNGKELIAVREISGNELIQTYTYEGVEAKRIFKK
General information:
TITO was launched using:
RESULT:
Template:
1T8V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4644 for 293 contacts (15.8/contact) +
2D Compatibility (PS) -5569 + (NN) 1559 + (LL) 308
1D Compatibility (HY) -2400 + (ID) 700
Total energy: -2158.0 ( -7.37 by residue)
QMean score : 0.036
(partial model without unconserved sides chains):
PDB file :
Tito_1T8V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T8V-query.scw
PDB file :
Tito_Scwrl_1T8V.pdb
: