Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKEDIKKQVRRAFDFRMAIRVYNNNDIPKEDMEYILDTAWLSPSSVGLEGWRFLVLDRQTIAKFRDKLKEVAWGAQYQLDTASHFVLLLAEKGAYYNADSMINSLVRRGLGDPAALESRIPLYKSFQENDMKIDSERSLWDWTAKQTYIALGNMMTAAAMIGVDSCPIEGFDYEKVNNILSKEGLIDDKKEAISCMVSFGYRLREPKHSRARKERQEVITWVE
3BEM Chain:A ((24-216))
----------------RSASNFLSGHPITKEDLNEMFELVALAPSAFNLQHTKYVTVLDQDV---KEKLKQAANG-QYKVVSSSAVLLVLGDKQAYQQAADIYEGLKVLGILNKQEYDHMVQDTVSFYENR----GEQFKRDEAIRNASLSAMMFMLSAAAAGWDTCPMIGFDAEAVKRILN----IDDQFEVVM-MITIGKEKTESR--RPRGYRKPVNEFVE
General information:
TITO was launched using:
RESULT:
Template:
3BEM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94668 for 1432 contacts (-66.1/contact) +
2D Compatibility (PS) -20242 + (NN) -1885 + (LL) 2656
1D Compatibility (HY) -9600 + (ID) 3000
Total energy: -126739.0 ( -88.50 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_3BEM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BEM-query.scw
PDB file :
Tito_Scwrl_3BEM.pdb
: