Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIIGLTGGIASGKSTVTKIIRESGFKVIDADQVVHKLQAKGGKLYQALLEWLGPEILDADGELDRPKLSQMIFANPDNMKTSARLQNSIIRQELACQRDQLKQTEEIFFVDIPLLIEEKYIKWFDEIWLVFVDKEKQLQRLMARNNYSREEAELRLSHQMPLTDKKSFASLIINNNGDLITLKEQILDALQRL
1VHL Chain:A ((6-179))
---IVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEKNWLNALLHPLIQQETQHQ--IQQATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQATREARLAVADDVIDNNGAPDAIASDVARLHAHY
General information:
TITO was launched using:
RESULT:
Template:
1VHL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66404 for 1256 contacts (-52.9/contact) +
2D Compatibility (PS) -19335 + (NN) -11169 + (LL) 348
1D Compatibility (HY) -10800 + (ID) 3050
Total energy: -110410.0 ( -87.91 by residue)
QMean score : 0.618
(partial model without unconserved sides chains):
PDB file :
Tito_1VHL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VHL-query.scw
PDB file :
Tito_Scwrl_1VHL.pdb
: