Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSRPIGFLDSGVGGLTVVKEMFRQLPEEEVIFIGDQARAPYGPRPAQQIREFTWQMVNFLLTKNVKMIVIACNTATAVAWQEIKEKLDIPVLGVILPGASAAIKSTNSGKVGIIGTPMTVKSDAYRQKIQALSPNTAVVSLACPKFVPIVESNQMSSSLAKKVVYETLSPLVGK-LDTLILGCTHYPLLRPIIQNVMGAEVKLIDSGAETVRDISVLLNYFEINHNWQNKHGGHHFYTTASPKGFKEIAEQWLSQEINVERIVL
2VVT Chain:A ((23-278))
-NQEAIGLIDSGVGGLTVLKEALKQLPNERLIYLGDTARCPYGPRPAEQVVQFTWEMADFLLKKRIKMLVIACNTATAVALEEIKAALPIPVVGVILPGARAAVKVTKNNKIGVIGTLGTIKSASYEIAIKSKAPAIEVTSLACPKFVPIVESNQYRSSVAKKIVAETLQALQLKGLDTLILGCTHYPLLRPVIQNVMGSHVTLIDSGAETVGEVSMLLDYFDIAHTP-----PHEFYTTGSAKMFEEIASSWLGIENLKAQQIH
General information:
TITO was launched using:
RESULT:
Template:
2VVT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -232079 for 2262 contacts (-102.6/contact) +
2D Compatibility (PS) -26776 + (NN) -9233 + (LL) 184
1D Compatibility (HY) -31200 + (ID) 8000
Total energy: -307104.0 ( -135.77 by residue)
QMean score : 0.601
(partial model without unconserved sides chains):
PDB file :
Tito_2VVT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VVT-query.scw
PDB file :
Tito_Scwrl_2VVT.pdb
: