Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLNHKFLQVLKYEGVVSITSWTELAPHVTNTWNSYLTITDDQRILAPAAGMTHLENDLNNNSKIIMTLGSREVEGRDGYQGTGFRIEGTAKLLEAGSDFEIVKKKYPFLRKVLEVTPINVIQLL
3VY2 Chain:A ((1-122))
MLPGTFFEVLKNEGVVAIATQGEDGPHLVNTWDSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAGRNG-PGTGFLIRGSAAFRTDGPEFEAI-ARFKWARAALVITVVSAEQTL
General information:
TITO was launched using:
RESULT:
Template:
3VY2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80250 for 916 contacts (-87.6/contact) +
2D Compatibility (PS) -13001 + (NN) -3595 + (LL) 156
1D Compatibility (HY) -9200 + (ID) 2600
Total energy: -108490.0 ( -118.44 by residue)
QMean score : 0.446
(partial model without unconserved sides chains):
PDB file :
Tito_3VY2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VY2-query.scw
PDB file :
Tito_Scwrl_3VY2.pdb
: