Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKEILVLGAGYAGLKAVRNLQKQSGDFHITLVDMNDYHYEATELHEVAAGSQPKEKITFPIKDVINTNK--VNFMQDEVLKVDAENKTVTVKN--------------------NGELHYDYVVVALGFVSETFGIKGAMENALQMTNISQAENIHNHIVNTMKLYR-----ETKDENLLKLLVCGAGFTGIELAGAMVDE-----RPKYAALAGVKPEQIEIICVEAATRILPMFDDELAQYGVNLIKDLGINLMLGSMIKEIKPGEVVYGTSKEDEEL--KSITAGTIIWTTGVSGSPVMGE------SGFDQRRGRVMVNSDLRDPKYDNVYVIGDVSAFMDTESGRPFPTTAQIATRMGAHVAKNLLHQIKGEATEDFSYSPQGTVASVGNTHGLGVVGKTKIKKYPASVMKKIIMNKSLVDMGGLKELLAKGRFDLYH |
| 4GAP Chain:A ((14-365)) | ---VLILGSGWGAISFLKHIDTKK--YNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALA----EEVQIHLVEALPIVLNMFEKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKKIPEQNSSKRG-LAVNDFLQVKGSNNIFAIGD-NAFAG------LPPTAQVAHQEAEYLAKNFDKMAQIPNFQKIDLLFEENNFKPFKYNDLGALAYLGSERAIATIRSGKRTFYTGGGLMTFYLWRILYLSMILS |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GAP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -235384 for 2528 contacts (-93.1/contact) +
2D Compatibility (PS) -33469 + (NN) -7562 + (LL) 280
1D Compatibility (HY) -20800 + (ID) 4400
Total energy: -301335.0 ( -119.20 by residue)
QMean score : 0.511
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