Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLKQAFIENDSIRLKLSASDWKEAIKLSIDPLIESGAVDAEYYDAIIESTEEFGPYYILMPGMAMPHARPEAG--VKRDAFSLITLTEPVVFPDGKE--VSVLLALAATSSAIHTSVAIPQIIALFELENSIQRLTECQEAKEVLAMVEESKNSPYLEGLDLES
2FEW Chain:A ((10-147))
----------ENIFLGRKAATKEEAIRFAGEQLVKGGYVEPEYVQAMLDR-EKLTPTY-LGESIAVPQGTVEAKDRVLKTGVVFCQYPEGVRFGEEEDDIARLVIGIAARNNE-HIQV-ITSLTNALDDESVIERLAHTTSVDEVLELLAGR-------------
General information:
TITO was launched using:
RESULT:
Template:
2FEW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106598 for 1044 contacts (-102.1/contact) +
2D Compatibility (PS) -14274 + (NN) -2638 + (LL) 1964
1D Compatibility (HY) -10400 + (ID) 1800
Total energy: -133746.0 ( -128.11 by residue)
QMean score : 0.518
(partial model without unconserved sides chains):
PDB file :
Tito_2FEW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FEW-query.scw
PDB file :
Tito_Scwrl_2FEW.pdb
: