Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKIIIVAHGNFPDGILSSLELIAGHQEYVVGINFIAGMSSNDV--RVALQREVIDF-KEILVLTDLLGGTPFNVSSALSVEYTDKKIKVLSGLNLSMLMEAVLSRTMFEHVDDLVDKVITSSHEGIVDFSTCLATQTAEATFEGGI
1VSQ Chain:A ((2-125))
-IAIVIGTHGWAAEQLLKTAEMLLGEQENVGWIDFVPGENAETLIEKYNAQLAKLDTTKGVLFLVDTWGGSPFNAASRIVVD--KEHYEVIAGVNIPMLVETLMARDDDPSFDELVALAVETGREGVKALKAKPV------------
General information:
TITO was launched using:
RESULT:
Template:
1VSQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96915 for 928 contacts (-104.4/contact) +
2D Compatibility (PS) -13051 + (NN) -2496 + (LL) 1368
1D Compatibility (HY) -9600 + (ID) 1950
Total energy: -122644.0 ( -132.16 by residue)
QMean score : 0.405
(partial model without unconserved sides chains):
PDB file :
Tito_1VSQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VSQ-query.scw
PDB file :
Tito_Scwrl_1VSQ.pdb
: