Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLFQSKINYPKKSSIITQITLWYSSFIFILVIGVLIGSFFISKSIAENKSKKNLEAKAVQMSQALAKGHRYEAFEDGIFYSVYDQNGKVIYSGFPKGFKRDLDHQHKHKKKLSLFSMENRTFQYVDIPISGKNQWLRAIRTVDRLDKQLTELLFSLGIVLPLMLIIITVGGYLILKRTFRPIQEITETAQFITQNEDYTKRIITKNNENELTELAAVINTMLASIESSFVREKQFNNDVSHELRTPVTVI--LSESEYGKNYAENLSEAKESFEVIHRQSLSMKKLVEQLLELTKAEN-PLSIQLEPLNFSIMMKQLVSDSSRLLD--NTPIHLDSQIEDDLWIIGQQTLLKRLFDNLFSNAIKFT-----NNHISISLRQSDNQIVFSIKDNGLGISVDDQSKIWNRFYQVDSARTKDSQSGIGLGLSLVKQIATIHRAKIWVDSKPDNGSQFTLTFPKLKKD |
| 4JAV Chain:A ((22-247)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEV-PGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPKD--- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4JAV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -91493 for 1537 contacts (-59.5/contact) +
2D Compatibility (PS) -23153 + (NN) -9379 + (LL) 19432
1D Compatibility (HY) -19600 + (ID) 3350
Total energy: -127543.0 ( -82.98 by residue)
QMean score : 0.504
|
|
|