Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGK-PMFGTCAGLIILAKEIAG-SDNPHLGLLNVVVERNSFGRQVDSFEADLTIKGLDEPFTGVFIRAPHILEAGENVEVLSEHNGRIVAAKQGQFLGCSFHPELTEDHRVTQLFVEMVEEYKQKALV
2YWD Chain:A ((4-188))
--VVGVLALQGDFREHKEALKRLGIEAKEVRKKEHLEGLKALIVPGGESTTIGKLAREYGIEDEVRKRVEEGSLALFGTCAGAIWLAKEIVGYPEQPRLGVLEAWVERNAFGRQVESFEEDLEVEGLG-SFHGVFIRAPVFRRLGEGVEVLARLGDLPVLVRQGKVLASSFHPELTEDPRLHRYFLEL----------
General information:
TITO was launched using:
RESULT:
Template:
2YWD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -164608 for 1578 contacts (-104.3/contact) +
2D Compatibility (PS) -19392 + (NN) -3182 + (LL) 1740
1D Compatibility (HY) -17200 + (ID) 4500
Total energy: -207142.0 ( -131.27 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_2YWD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YWD-query.scw
PDB file :
Tito_Scwrl_2YWD.pdb
: