Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTAPFIAIEGPIGAGKTTLATMLSQ-KFGFPMINEIV---------------------EDNPYLDKFYDNIKEWSFQLEMFFLCHRYK--------QLEDTSDHFLKKGQPVIADYHIYKNVIFAERTLSPHQLEKYKKIYHLLTDDLPKP---NFIIYIKASLPTLLHRIEKRGRPFEKKIETSYLEQLISDYEV-----AIKQLQEADPELTVLTVDGDSKDFVLNKSDFERIAAHVKELIV
2NO9 Chain:A ((44-277))
------ISIEGNIAAGKSTFVNILKQLSEDWEVVPEPVARWSNVQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESESMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVN-EDF---KDKYESLVEKVKEFL-
General information:
TITO was launched using:
RESULT:
Template:
2NO9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89768 for 1399 contacts (-64.2/contact) +
2D Compatibility (PS) -20914 + (NN) -10494 + (LL) 768
1D Compatibility (HY) -17600 + (ID) 2850
Total energy: -140858.0 ( -100.68 by residue)
QMean score : 0.490
(partial model without unconserved sides chains):
PDB file :
Tito_2NO9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NO9-query.scw
PDB file :
Tito_Scwrl_2NO9.pdb
: