Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGFLRKKTLRREFDEKLTEQLFKQKEEWNRQKKLVEKSLEPSAEVLYELKVAEAKYFFYLREAKQRNLKISRWK
2RKJ Chain:A ((8-52))
--------------PKYTAKINEAEENWQARAEAIKKGKKQNTWDLFE--------------------------
General information:
TITO was launched using:
RESULT:
Template:
2RKJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 8733 for 144 contacts (60.6/contact) +
2D Compatibility (PS) -3965 + (NN) -5231 + (LL) 3960
1D Compatibility (HY) -800 + (ID) 350
Total energy: 2347.0 ( 16.30 by residue)
QMean score : 0.619
(partial model without unconserved sides chains):
PDB file :
Tito_2RKJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKJ-query.scw
PDB file :
Tito_Scwrl_2RKJ.pdb
: