Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEPIFIIGIILGLVILLFLSGSAAKPLKWIGITAVKFVAGALLLVCVNMFGGSLGIHVPINLVTTAISGILGIPGIAALVVIKQFII
2L8S Chain:A ((18-23))
----------AGLLLL-----------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2L8S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -885 for 15 contacts (-59.0/contact) +
2D Compatibility (PS) -502 + (NN) 1485 + (LL) 7128
1D Compatibility (HY) -1200 + (ID) 150
Total energy: 5876.0 ( 391.73 by residue)
QMean score : 1.366
(partial model without unconserved sides chains):
PDB file :
Tito_2L8S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2L8S-query.scw
PDB file :
Tito_Scwrl_2L8S.pdb
: