Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLFDTHAHLNAEQYDTDLEEVIERAKAEKVERIVVVGFDRPTITRAMEMIEEYDFIYAAIGWHPVDAIDMTEEDLAWIKELSAHEKVVAIGEMGLDYHWDKSPKDIQKEVFRNQIALAKEVNLPIIIHNRDATEDVVTILKEEGAEAVGGIMHCFTGSAEVARECMKMNFYLSFGGPVTF-KNAKKPKEVVKEIPNDRLLIETDCPF-----LTPHPFRGKRNEPSYVKYVAEQIAELKEMTFEEIASITTENAKRLFRIN
4P5U Chain:A ((1-258))
-MFDIGVNLTSSQFAKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLARQYSSCWSTAGVHPHDSSQWQAATEEAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLRIAADLNMPVFMHCRDAHERFMTLLEPWLDKLPGAVLHCFTGTREEMQACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDLTPKP-SSRRNEPAHLPHILQRIAHWRGEDAAWLAATTDANVKTLFGI-
General information:
TITO was launched using:
RESULT:
Template:
4P5U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -150608 for 2228 contacts (-67.6/contact) +
2D Compatibility (PS) -27180 + (NN) -13712 + (LL) 260
1D Compatibility (HY) -15200 + (ID) 4000
Total energy: -210440.0 ( -94.45 by residue)
QMean score : 0.629
(partial model without unconserved sides chains):
PDB file :
Tito_4P5U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4P5U-query.scw
PDB file :
Tito_Scwrl_4P5U.pdb
: