Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKSVKDFLNKHNLTLKGATIIVGVSGGPDSMALLHALHTLCGRSANVIAAHVDHRFRGAESEEDMRFVQAYCKAEQLVCETAQIN-VTAYAQEKGLNKQAAARDC----RYQFFEEIMSK----HQADYLALAHHGDDQVETMLMKLAKGTLGTGLAGMQPVRRFGTG-RIIRPFLTITKEEILHYCHENGLSYRTDES-NAKDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQFLQSLTKDEMNKVITSQSNTSVEINSSQLLALPMPLQRRGVQLILNYLYENVPSSFSAHHIQQFLDWAENGGPSGVLDFPKGLKVVKSYQTCLFTFEQWQCKNVPFEYQISGAADETAVLPNGYLIEARHYADSPEEHGNAVFITSEKKVRFPLTIRTRKAGDRIKLKGMNGSKKVKDIFIDKKLPLQERDNWPIVTDASGEIIWIPGLKKSIFEDLVIPNSDRIVLQYRQHEKCRGQAKS |
| 3VRH Chain:A ((32-283)) | -RKVSRTIERYKLLTKDERILVAVSGGKDSAVTAYVLKKL---GYNIECLHINLGISGY-SEKSEEYAKKQCKLIGAPLHIVRIKEILGYGIGEVKTRRPPCSYCGLTKRY-----IMNKFAYDNGFDAIATGHNLDDEASFLLNNILHWNTEYLAKGGPILPQQGKFIKKVKPLYEVTEREVVAYALAVGLEYIVEECPY----TTLD--MKGVLNELEEKRPGT--KFNFVRGYLKKKKLFEP-------KECKICRMPSSGDI------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VRH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -73491 for 1728 contacts (-42.5/contact) +
2D Compatibility (PS) -24365 + (NN) -7997 + (LL) 15428
1D Compatibility (HY) -6800 + (ID) 2800
Total energy: -100025.0 ( -57.88 by residue)
QMean score : 0.453
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