Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYRKLGRTSAQRKAMLRDLTTDLIINERIETTETRAKELRSVVEKMITLGKRGDLHARRQAAAYIRNEVANEENNQDALQKLFSDIATRYEERQGGYTRIMKLGP-RRGDGAPMAIIELV
1GD8 Chain:A ((14-117))
---------SSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRL--------VLRDLQDVKLVRKLFDEIAPRYRDRQGGYTRVLKLAERRRGDGAPLALVELV
General information:
TITO was launched using:
RESULT:
Template:
1GD8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28318 for 712 contacts (-39.8/contact) +
2D Compatibility (PS) -11711 + (NN) -8220 + (LL) 1444
1D Compatibility (HY) -10000 + (ID) 2700
Total energy: -59505.0 ( -83.57 by residue)
QMean score : 0.639
(partial model without unconserved sides chains):
PDB file :
Tito_1GD8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GD8-query.scw
PDB file :
Tito_Scwrl_1GD8.pdb
: