Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEMMIKKRIKQVKKGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINR-KFSTWLYRIATNLTIDRIRK-KKPD-----YYLDAEVAGTEGLTMYSQIVADGVLPEDA-VVSLELSNT-IQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALRKQLRDL
2Q1Z Chain:A ((25-183))
---------------DEAAFAELFQHFAPKVKGFLMKSGSVASQAEECAQDVMATVWQKAHLFDPSRASVATWIFTIARNRRIDGLRKDRQPEPEDLFWGPDSE-------------------PDQADVYEMQQENARLGRAIARLPEAQRALIERAFFGDLTHRELAAETGLPLGTIKSRIRLALDRLRQHM---
General information:
TITO was launched using:
RESULT:
Template:
2Q1Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47559 for 916 contacts (-51.9/contact) +
2D Compatibility (PS) -15738 + (NN) -4569 + (LL) 3324
1D Compatibility (HY) -6800 + (ID) 2150
Total energy: -73492.0 ( -80.23 by residue)
QMean score : 0.439
(partial model without unconserved sides chains):
PDB file :
Tito_2Q1Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Q1Z-query.scw
PDB file :
Tito_Scwrl_2Q1Z.pdb
: