Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKISFSESQKLFAYFSGLIAALSLFIYYVSAQQSEGALILCITFGVIAAGIWFGPIYALAVTLIVLFVLGTLMMFFQTGQTSLFPAEEGLRMLVVWGIALLLFSFISGRIHDITAELRRSMTRLQSEIKSYVAVDRVTGFDNKQRMKLELSEEIKRAERYGNSFVFLLLHMHYFKEFKSLYGEKETDRLFQYVGQQIRTSV-RETDKKFRPSDERIGIVLTHTPAEHMPAVLTKLKKQLDTYQLEN-----GKYVSLTFHVCYL-------PYRNDIQTADQFLEELENEMMMNEL
3BRE Chain:A ((174-328))--------------------------------------------------------------------------------------------------------------------------------------DGLTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHDQPRPGSHLTVSIGVSTLVPGGGGQTFRVLIEMADQALYQAKN-------


General information:
TITO was launched using:
RESULT:

Template: 3BRE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 669 -92339 -138.03 -650.27
target 2D structure prediction score : 0.71
Monomeric hydrophicity matching model chain A : 0.57

3D Compatibility (PKB) : -138.03
2D Compatibility (Sec. Struct. Predict.) : 0.71
1D Compatibility (Hydrophobicity) : 0.57
QMean score : 0.550

(partial model without unconserved sides chains):
PDB file : Tito_3BRE.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3BRE-query.scw
PDB file : Tito_Scwrl_3BRE.pdb: