Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSAGKSYRKKMKQRRMNMKISKYALGILMLSLVFVLSACGNNNSTKESTHDNHSDSSTHEEM----DHSGSADVPEGLQESKNPKYKVGSQVIINTSHMKGMKGAEATVTGAYD------TTAYVVSYTPTNGGQRVDHHKWVIQEEIKDAGDKTLQPGDQVILEASHMKGMKGATAEIDSAEKTTVYMVDYTSTTSGEKVKNHKWVTEDELSAK
3M5J Chain:A ((104-223))------------------QILRRSGGIGKESMGFTYSGIRTNGATSACTR---SGSSFYAEMKWLLSNSDNAAFPQMTKAYRNPRNK--PALIIWGVHHSESVSEQTKLYGSGNKLITVRSSKYQQSFTPNPGARRIDFH-WLL-----------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 3M5J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 270 -7891 -29.22 -71.73
target 2D structure prediction score : 0.44
Monomeric hydrophicity matching model chain A : 0.66

3D Compatibility (PKB) : -29.22
2D Compatibility (Sec. Struct. Predict.) : 0.44
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.189

(partial model without unconserved sides chains):
PDB file : Tito_3M5J.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3M5J-query.scw
PDB file : Tito_Scwrl_3M5J.pdb: