Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSGEQKSYLENQLEAVAEKTDAGYTFTFQREKIKLLDGLEANVIKDINPFFHKEIDVTDDEVIITIQPPSSYKAFRFMKAKDKKSKWQFAYQLVQAVQQHNLSRLNLIVAPENIVFDKGLTPYFLHYGVKESIPPYERDEERVWQELKAAAALAVDGAFAFEDYLKFNETLTFSAEAKAILDAESYDDLLELIQTHIDELEAKAKTYIHIPRKKWNIQRYIGLGLIVLLVPALIYSMYALFFAQPKHQAIVDSNRAFLNKQYSEVISTLSKYDAESLPESVQYQLATSYVEVENLGSAKTKNIENNLVTLQSDPQHFLYWIDYGRGEYKEAISIGRKLEYNDYIYFALAKYKQQLLSE-DTNDEDIQKELDSVNSELEKAQKERQENKQSNSETSLVDTSEEQTQTDEEKQAEEKAAEEKAAAEEKAKKEEQKEKEDEKKETEKKDEKKDDK
2YNQ Chain:D ((5-146))--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AQPKQEAYIQSTELFLQNKYSDVITTLEDYAPEDMPYVIQYELASSYVMTESLTEEQRQTVSNN-ITLKTDEQYMLYWIYIGRSQSEEALELARTIEDRDLIVYALLKYREQIKGDTDLSGDEKQKKLDEIDQEIKEYERERK-------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 2YNQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 511 -37136 -72.67 -263.37
target 2D structure prediction score : 0.62
Monomeric hydrophicity matching model chain D : 0.66

3D Compatibility (PKB) : -72.67
2D Compatibility (Sec. Struct. Predict.) : 0.62
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.563

(partial model without unconserved sides chains):
PDB file : Tito_2YNQ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2YNQ-query.scw
PDB file : Tito_Scwrl_2YNQ.pdb: