Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVAPHEDPEDHVAPAAQRVRAGTLLLANTDLLEPTFRRSVIYIVEHNDGGTLGVVLNRPSETAVYNVLPQW--------AKLAAKPKTMFIGGPVKRDAALCLAVLR--VGADPEGVPGLRHVAGRLVMVDLDA--DPEVLAAAVEGVRIYAGYSGWTIGQLEGEIERDDWIVLSALPSDVLVGPRADLWGQVLRR---QPLPLSLLATHPIDLSRN
2GZO Chain:A ((8-187))
-----------------------FLIAMPSLDDTFFERTVIYLCEHDEKGAMGLVINKPLGIEVNSLLEQMDLPTEQVSADLAMGSQVL-MGGPVSQDRGFVLHTSQPYWANSTELGSGLMLTTSRDVLTAIGSKRSPDKFLVAL-------GYAGWSKNQLEQELADNSWLTIPADHALLFDINHEDRWQQASRSLGFEAWQLSTQAGHA------
General information:
TITO was launched using:
RESULT:
Template:
2GZO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91827 for 1131 contacts (-81.2/contact) +
2D Compatibility (PS) -17702 + (NN) -3637 + (LL) 2520
1D Compatibility (HY) -10400 + (ID) 2600
Total energy: -123646.0 ( -109.32 by residue)
QMean score : 0.227
(partial model without unconserved sides chains):
PDB file :
Tito_2GZO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GZO-query.scw
PDB file :
Tito_Scwrl_2GZO.pdb
: