Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MCADAQPSGSVGLLGRNCPTATTRWRRAGEGLTAADTIEVKLWAGKPRLHPLVPKRAVGVLLAVAHGQVAKTPSATRAIAFRHVRLMRVRWICAGNRGRKHKRRCTTQYRSTQASKLQLHFKLRQTLNRLGGLQAMVSACG
1JDQ Chain:A ((20-60))
-MAKYQVTKTLDVRGEVCPVPDVETKRALQNMKPGEILEVWI---------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1JDQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2727 for 184 contacts (-14.8/contact) +
2D Compatibility (PS) -4351 + (NN) -10 + (LL) 7960
1D Compatibility (HY) -2400 + (ID) 450
Total energy: -1978.0 ( -10.75 by residue)
QMean score : 0.411
(partial model without unconserved sides chains):
PDB file :
Tito_1JDQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JDQ-query.scw
PDB file :
Tito_Scwrl_1JDQ.pdb
: