Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGWVAKIFRVGRVVEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPQHADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGDCALNRGVFA------DAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK
1UBJ Chain:S ((89-161))
-----------------------------------------------------------------------------------VANHTMLDICSRIL---PKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPNPYNLVGTI------
General information:
TITO was launched using:
RESULT:
Template:
1UBJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42932 for 424 contacts (-101.3/contact) +
2D Compatibility (PS) -6801 + (NN) 111 + (LL) 5548
1D Compatibility (HY) -4000 + (ID) 1250
Total energy: -49324.0 ( -116.33 by residue)
QMean score : 0.132
(partial model without unconserved sides chains):
PDB file :
Tito_1UBJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UBJ-query.scw
PDB file :
Tito_Scwrl_1UBJ.pdb
: