Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDQPWNANIHYDALLDAMVPLGTQCVLDVGCGDGLLAARLARRIPYVTAVDIDAPVLRRAQTRFANAPIRWLHADIMTAELPNAGFDAVVSNAALHHIEDTRTALSRLGGLVTPGGTLAVVTFVTPSLRNGLWHLTSWVACGMANRVKGKWEHSAPIKWPPPQTLHELRSHVRALLPGACIRRLLYGRVLVTWRAPV
3L8D Chain:A ((57-159))
-------------------------VLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDG-YACIAILGPTAK--------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3L8D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82048 for 779 contacts (-105.3/contact) +
2D Compatibility (PS) -11478 + (NN) -7593 + (LL) 6432
1D Compatibility (HY) -8000 + (ID) 1300
Total energy: -103987.0 ( -133.49 by residue)
QMean score : 0.439
(partial model without unconserved sides chains):
PDB file :
Tito_3L8D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L8D-query.scw
PDB file :
Tito_Scwrl_3L8D.pdb
: