Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAILRGRAPLRLGLGGGGTDVEPYSSQFGGRILSVTIDKYAYAFAERGTGDEIAFRSPDRDRAGQASIDDLASLEE----DFPLHVAVYRRVIAEFN--GGTPFPLQLATQVDAPPGSGLGSSSALVVAMLLTTCALIGSSPGPYELARLAWEIERVDLGMAGGWQDHYAAAFGGFNFMESRPNGEVVVNPLRIRREVIAELE------ASLLLYFGGVSRLSSEVIADQQRNVVERDADALAATHSICAEALEMKDLLVVGDIPGFADSLLRGWQAKKRTSTRISNPAIEHAYQVAQSSGMVAGKVSGAGGGGFLMMIVDPRRRIEVARSLERECGGSVAPCLFTKGGAVTWHIPESTAPVRRGVADAVASALGNAGILLCAGCVLATSHSTWRVPV |
| 1KKH Chain:A ((24-291)) | ---------------------------YGYRAISMAIDLTSTIEIKETQEDEIILNLNDLNKSLGLNLNEIKNINPNNFGDFKYCLCAIKNTLDYLNIEPKTGFKINISSKI--PISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKAS-ITDTSTITYKGI--LEIKNNK---------FRKIKGEFEEFLKNCKFLIVYAEKRKKKTAELVNEVAK--IENKDEIFKEIDKVIDEALKIKNKEDFGKLMTKNHELLKKLN--------ISTPKLDRIVDIGNRFGFGA-KLTGAGGGGCVIILV------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KKH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -134955 for 2024 contacts (-66.7/contact) +
2D Compatibility (PS) -27612 + (NN) -10250 + (LL) 6996
1D Compatibility (HY) -16000 + (ID) 2850
Total energy: -184671.0 ( -91.24 by residue)
QMean score : 0.427
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